6N41
Crystal structure of InvbM.18715.a.KN11: Influenza hemagglutinin from strain A/Netherlands/002P1/1951
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-10-25 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97872 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 70.280, 123.410, 119.970 |
Unit cell angles | 90.00, 95.54, 90.00 |
Refinement procedure
Resolution | 46.274 - 2.500 |
R-factor | 0.1884 |
Rwork | 0.187 |
R-free | 0.23550 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (dev_3297) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.274 | 46.274 | 2.560 |
High resolution limit [Å] | 2.500 | 11.180 | 2.500 |
Rmerge | 0.092 | 0.027 | 0.791 |
Rmeas | 0.106 | 0.031 | 0.904 |
Total number of observations | 300573 | ||
Number of reflections | 70379 | 806 | 5165 |
<I/σ(I)> | 12.09 | 37.63 | 2.11 |
Completeness [%] | 99.9 | 97.2 | 100 |
Redundancy | 4.271 | 3.891 | 4.294 |
CC(1/2) | 0.997 | 0.999 | 0.813 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 9 | 289 | SEC purified InvbM.18715.a.KN11.PD38309 at 10.4mg/ml (in 25mM TRIS pH 8, 150mM NaCl) was crystallized by sitting drop vapor diffusion at 14C with an equal volume (0.1:0.1uL) of protein:mother liquor (0.1M MMT buffer pH9, 27.5% PEG1500), then cyoprotected in mother liquor+15% ethylene glycol, before being flash-frozen for data collection. Crystal ID 304301a12 data set xee7-4 |