6N2L
Crystal structure of a histone family protein DNA-binding protein from Burkholderia ambifaria
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E+ SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-06-06 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.5418 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 38.210, 71.400, 76.730 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.365 - 1.850 |
R-factor | 0.2495 |
Rwork | 0.245 |
R-free | 0.29460 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1P71 as per MoRDa |
RMSD bond length | 0.006 |
RMSD bond angle | 0.643 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MoRDa |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 38.365 | 38.365 | 1.900 |
High resolution limit [Å] | 1.850 | 8.270 | 1.850 |
Rmerge | 0.064 | 0.048 | 0.506 |
Rmeas | 0.066 | 0.050 | 0.537 |
Total number of observations | 137737 | ||
Number of reflections | 9290 | 129 | 667 |
<I/σ(I)> | 28.26 | 56.23 | 4.72 |
Completeness [%] | 99.9 | 100 | 100 |
Redundancy | 14.826 | 17.24 | 8.852 |
CC(1/2) | 0.998 | 0.996 | 0.969 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 290 | 6.92 mg/mL BuamA.00144.b.B1.PS37906 with Microlytic MCSG1 screen, condition B8 (25.5% PEG4000, 15% glycerol, 170 mM sodium acetate), cryoprotection: direct, tray 272705 h3, puck ndf9-5 |