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6N2L

Crystal structure of a histone family protein DNA-binding protein from Burkholderia ambifaria

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU FR-E+ SUPERBRIGHT
Temperature [K]100
Detector technologyCCD
Collection date2016-06-06
DetectorRIGAKU SATURN 944+
Wavelength(s)1.5418
Spacegroup nameC 2 2 21
Unit cell lengths38.210, 71.400, 76.730
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution38.365 - 1.850
R-factor0.2495
Rwork0.245
R-free0.29460
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1P71 as per MoRDa
RMSD bond length0.006
RMSD bond angle0.643
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMoRDa
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]38.36538.3651.900
High resolution limit [Å]1.8508.2701.850
Rmerge0.0640.0480.506
Rmeas0.0660.0500.537
Total number of observations137737
Number of reflections9290129667
<I/σ(I)>28.2656.234.72
Completeness [%]99.9100100
Redundancy14.82617.248.852
CC(1/2)0.9980.9960.969
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.52906.92 mg/mL BuamA.00144.b.B1.PS37906 with Microlytic MCSG1 screen, condition B8 (25.5% PEG4000, 15% glycerol, 170 mM sodium acetate), cryoprotection: direct, tray 272705 h3, puck ndf9-5

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PDB entries from 2024-05-15

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