Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6N0N

Crystal structure of Tdp1 catalytic domain in complex with compound XZ574

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-ID
Synchrotron siteAPS
Beamline22-ID
Temperature [K]100
Detector technologyCCD
Collection date2017-02-16
DetectorRAYONIX MX300-HS
Wavelength(s)1.0000
Spacegroup nameP 21 21 21
Unit cell lengths49.927, 105.202, 193.743
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution36.979 - 1.477
R-factor0.1635
Rwork0.163
R-free0.17500
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1jy1
RMSD bond length0.007
RMSD bond angle0.850
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwarePHASER
Refinement softwarePHENIX ((1.14_3260: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.510
High resolution limit [Å]1.4771.477
Rmerge0.0530.598
Rmeas0.0710.724
Rpim0.0270.285
Number of reflections1710428405
<I/σ(I)>38.32.2
Completeness [%]99.999.4
Redundancy7.26.2
CC(1/2)0.834
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.52910.1M MOPS/HEPES-Na pH 7.5, 10% (w/v) PEG 8000, 20% (v/v) ethylene glycol, 0.03 M sodium fluoride, 0.03 M sodium bromide, 0.03 M sodium iodide

239492

PDB entries from 2025-07-30

PDB statisticsPDBj update infoContact PDBjnumon