6MVG
Crystal structure of FMN-binding beta-glucuronidase from Ruminococcus gnavus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-04-12 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.033 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 236.028, 127.078, 88.819 |
Unit cell angles | 90.00, 98.49, 90.00 |
Refinement procedure
Resolution | 29.876 - 2.800 |
R-factor | 0.1873 |
Rwork | 0.185 |
R-free | 0.24560 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.072 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.14_3260)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.900 | 2.900 |
High resolution limit [Å] | 2.800 | 2.800 |
Rmerge | 0.077 | 0.607 |
Number of reflections | 63747 | 6333 |
<I/σ(I)> | 14.03 | 2.36 |
Completeness [%] | 99.7 | 99.91 |
Redundancy | 3.4 | 3.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 20.4 mg/mL protein, 0.13 M magnesium acetate, 10% PEG 8000 |