6MG6
Crystal structure of carbon-nitrogen hydrolase from Helicobacter pylori G27
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.1 |
Synchrotron site | ALS |
Beamline | 5.0.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-09-01 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97741 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 137.580, 91.380, 95.040 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.576 - 2.100 |
R-factor | 0.169 |
Rwork | 0.168 |
R-free | 0.20770 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5h8iA as per Morda |
RMSD bond length | 0.007 |
RMSD bond angle | 0.845 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3247) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.576 | 47.576 | 2.150 |
High resolution limit [Å] | 2.100 | 9.390 | 2.100 |
Rmerge | 0.039 | 0.017 | 0.543 |
Rmeas | 0.042 | 0.019 | 0.589 |
Number of reflections | 70182 | 890 | 5170 |
<I/σ(I)> | 25.59 | 70.38 | 3.36 |
Completeness [%] | 99.4 | 98.8 | 100 |
Redundancy | 6.543 | 5.679 | 6.67 |
CC(1/2) | 1.000 | 0.999 | 0.893 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 290 | Microlytic MCSG1 screen, G8: 25% PEG 3350, 200mM Ammonium sulfate, 100mM Tris Base/HCl pH 8.5: HepyC.18002.a.B1.PS38436 at 19.87mg/ml: cryo: 15% EG: tray 3301220G8: puck eko9-11 |