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6MFW

Crystal structure of a 4-domain construct of LgrA in the substrate donation state

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCLSI BEAMLINE 08ID-1
Synchrotron siteCLSI
Beamline08ID-1
Temperature [K]100
Detector technologyPIXEL
Collection date2017-05-14
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)0.979
Spacegroup nameP 21 21 21
Unit cell lengths66.370, 133.870, 162.099
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution69.333 - 2.500
R-factor0.2021
Rwork0.200
R-free0.24350
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5es5
RMSD bond length0.004
RMSD bond angle0.672
Data reduction softwareMOSFLM
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX ((1.13_2998: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]69.3332.580
High resolution limit [Å]2.5002.500
Number of reflections508904629
<I/σ(I)>10.1
Completeness [%]100.099.9
Redundancy7.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.7295Protein + 2.5 mM AMPcPP + 2.5 mM valine + 2 mM N5-fTHF in 2.5 mM magnesium chloride, 15% PEG4000, 100 mM Tris, pH 7.78, 25 mM Tris, pH 7.5, 100 mM sodium chloride equilibrated against a reservoir containing 2.5 mM magnesium chloride, 18% PEG4000, 150 mM sodium chloride, 100 mM Tris, pH 7.7, drops streak-seeded from a seed stock of LgrA (F-A-PCP-C) crystals

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PDB entries from 2024-05-15

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