6MEA
Crystal structure of a Tylonycteris bat coronavirus HKU4 macrodomain in complex with adenosine diphosphate ribose (ADP-ribose)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-07-02 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 1.0000 |
Spacegroup name | P 1 |
Unit cell lengths | 33.614, 41.642, 59.783 |
Unit cell angles | 73.16, 88.29, 88.25 |
Refinement procedure
Resolution | 33.590 - 1.350 |
R-factor | 0.1431 |
Rwork | 0.142 |
R-free | 0.16210 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5dus |
RMSD bond length | 0.007 |
RMSD bond angle | 1.396 |
Data reduction software | XDS (Version Nov. 1, 2016) |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER (2.8.2) |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.850 | 1.370 |
High resolution limit [Å] | 1.350 | 1.350 |
Rmerge | 0.121 | 0.657 |
Rmeas | 0.142 | 0.783 |
Rpim | 0.074 | 0.421 |
Number of reflections | 63312 | 2865 |
<I/σ(I)> | 9.8 | 3 |
Completeness [%] | 92.7 | 86.2 |
Redundancy | 3.7 | 3.4 |
CC(1/2) | 0.991 | 0.662 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | 20-25% PEG3350, 0.1 M HEPES, pH 7.0-7.5, protein:ligand molar ratio 1:10 |