6M8O
Crystal structure of the receiver domain of LytR from Staphylococcus aureus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-08-15 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.9795 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 84.747, 84.747, 157.304 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 42.700 - 2.500 |
R-factor | 0.20136 |
Rwork | 0.199 |
R-free | 0.23666 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2qvo |
RMSD bond length | 0.022 |
RMSD bond angle | 2.306 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASES |
Refinement software | REFMAC (5.8.0230) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.660 | 2.600 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmerge | 0.087 | 2.607 |
Rmeas | 0.089 | 2.669 |
Rpim | 0.026 | 0.781 |
Number of reflections | 12211 | 1323 |
<I/σ(I)> | 20.3 | 1.8 |
Completeness [%] | 99.9 | 99.7 |
Redundancy | 20.9 | 21.5 |
CC(1/2) | 0.998 | 0.910 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 277 | 100 mM MES (pH 6.5), 1.6 M magnesium sulfate heptahydrate |