6M8N
Endo-fucoidan hydrolase P5AFcnA from glycoside hydrolase family 107
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-08-03 |
Detector | DECTRIS PILATUS3 R 200K-A |
Wavelength(s) | 1.5418 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 97.455, 97.455, 96.684 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 38.710 - 1.550 |
R-factor | 0.1601 |
Rwork | 0.159 |
R-free | 0.18050 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.015 |
RMSD bond angle | 1.785 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0230) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.000 | 40.000 | 1.580 |
High resolution limit [Å] | 1.550 | 4.210 | 1.550 |
Rmerge | 0.068 | 0.062 | 0.565 |
Rmeas | 0.071 | 0.064 | 0.629 |
Rpim | 0.022 | 0.017 | 0.273 |
Number of reflections | 77250 | 4096 | 3832 |
<I/σ(I)> | 13.2 | ||
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 7.8 | 14.5 | 5.2 |
CC(1/2) | 0.998 | 0.837 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291.15 | Sodium malonate pH 6-7 |