6M27
Sirohydrochlorin nickelochelatase CfbA in complex with Ni2+
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-17A |
Synchrotron site | Photon Factory |
Beamline | BL-17A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-02 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.48644 |
Spacegroup name | P 41 |
Unit cell lengths | 68.210, 68.210, 81.210 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.470 - 2.600 |
R-factor | 0.1939 |
Rwork | 0.192 |
R-free | 0.23010 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2xws |
RMSD bond length | 0.011 |
RMSD bond angle | 2.432 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 41.470 | 41.470 | 2.700 |
High resolution limit [Å] | 2.600 | 10.000 | 2.600 |
Rmerge | 0.085 | 0.045 | 0.989 |
Rmeas | 0.089 | 0.048 | 1.045 |
Total number of observations | 222269 | ||
Number of reflections | 11541 | 392 | 2446 |
<I/σ(I)> | 18.26 | 37.13 | 3.06 |
Completeness [%] | 100.0 | 99 | 100 |
Redundancy | 9.86 | 9.737 | 9.957 |
CC(1/2) | 0.999 | 0.997 | 0.765 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.8 | 293 | 0.1M ammonium sulfate, 0.3M Na-formate, 0.1M Tris, 3 % (w/v) gamma-PGA, 5% (w/v) PEG 3350 |