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6M27

Sirohydrochlorin nickelochelatase CfbA in complex with Ni2+

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPHOTON FACTORY BEAMLINE BL-17A
Synchrotron sitePhoton Factory
BeamlineBL-17A
Temperature [K]100
Detector technologyPIXEL
Collection date2019-03-02
DetectorDECTRIS EIGER X 16M
Wavelength(s)1.48644
Spacegroup nameP 41
Unit cell lengths68.210, 68.210, 81.210
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution41.470 - 2.600
R-factor0.1939
Rwork0.192
R-free0.23010
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2xws
RMSD bond length0.011
RMSD bond angle2.432
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]41.47041.4702.700
High resolution limit [Å]2.60010.0002.600
Rmerge0.0850.0450.989
Rmeas0.0890.0481.045
Total number of observations222269
Number of reflections115413922446
<I/σ(I)>18.2637.133.06
Completeness [%]100.099100
Redundancy9.869.7379.957
CC(1/2)0.9990.9970.765
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.82930.1M ammonium sulfate, 0.3M Na-formate, 0.1M Tris, 3 % (w/v) gamma-PGA, 5% (w/v) PEG 3350

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PDB entries from 2024-05-15

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