6LY6
PylRS C-terminus domain mutant bound with 3-(1-Naphthyl)-L-alanine and AMPNP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE BL15A1 |
Synchrotron site | NSRRC |
Beamline | BL15A1 |
Temperature [K] | 110 |
Detector technology | CCD |
Collection date | 2017-03-27 |
Detector | RAYONIX MX300HE |
Wavelength(s) | 1.0 |
Spacegroup name | P 64 |
Unit cell lengths | 105.723, 105.723, 71.597 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 26.431 - 2.500 |
R-factor | 0.178766103593 |
Rwork | 0.177 |
R-free | 0.19172 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2zce |
RMSD bond length | 0.009 |
RMSD bond angle | 1.213 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX (1.11.1_2575) |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 28.201 | 2.590 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmeas | 0.094 | 0.513 |
Rpim | 0.029 | 0.171 |
Number of reflections | 15881 | 1581 |
<I/σ(I)> | 38.1 | 3.4 |
Completeness [%] | 99.0 | |
Redundancy | 10.6 | 8.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 100 mM HEPES, 10% PEG 8000, 10% Ethylene Glycerol |