6LTR
Crystal structure of Cas12i2 ternary complex with single Mg2+ bound in catalytic pocket
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-05-14 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.9999 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 93.256, 123.025, 280.420 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.740 - 2.510 |
R-factor | 0.199 |
Rwork | 0.198 |
R-free | 0.22600 |
Structure solution method | SAD |
RMSD bond length | 0.007 |
RMSD bond angle | 1.134 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.545 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmerge | 0.054 | 0.353 |
Rmeas | 0.058 | 0.391 |
Rpim | 0.022 | 0.165 |
Number of reflections | 55232 | 2586 |
<I/σ(I)> | 31.6 | 4.2 |
Completeness [%] | 99.0 | 94.8 |
Redundancy | 9.48 | 5.1 |
CC(1/2) | 0.992 | 0.936 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 7.5 | 289 | 0.2 M Ammonium acetate, 20% PEG 3350 |