6LR8
Mutant L331A of deglycosylated hydroxynitrile lyase isozyme 5 from Prunus communis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-01-12 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.9789 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 49.553, 91.162, 130.924 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.313 - 1.595 |
R-factor | 0.1536 |
Rwork | 0.153 |
R-free | 0.17350 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6jby |
RMSD bond length | 0.006 |
RMSD bond angle | 0.920 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.630 |
High resolution limit [Å] | 1.595 | 4.340 | 1.600 |
Rmerge | 0.086 | 0.047 | 0.393 |
Rmeas | 0.089 | 0.049 | 0.410 |
Rpim | 0.025 | 0.014 | 0.115 |
Number of reflections | 78549 | 4243 | 3811 |
<I/σ(I)> | 8.5 | ||
Completeness [%] | 98.8 | 99.1 | 98.2 |
Redundancy | 12.1 | 12.5 | 12.4 |
CC(1/2) | 0.997 | 0.950 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.25 | 289 | Tris-bicine, 100 mM, pH 8.25; CaCl2, 60 mM; MgCl2, 60 mM; PEG 500MME, 24%, v/v; PEG 20000, 12%, w/v |