6LOO
Crystal Structure of Class IB terpene synthase bound with geranylcitronellyl diphosphate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL26B1 |
Synchrotron site | SPring-8 |
Beamline | BL26B1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-10-31 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 1 |
Spacegroup name | P 1 |
Unit cell lengths | 50.870, 53.480, 76.540 |
Unit cell angles | 94.63, 104.72, 113.33 |
Refinement procedure
Resolution | 48.120 - 1.990 |
R-factor | 0.1813 |
Rwork | 0.179 |
R-free | 0.22460 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5yo8 |
RMSD bond length | 0.006 |
RMSD bond angle | 1.320 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.120 | 48.120 | 2.040 |
High resolution limit [Å] | 1.990 | 8.900 | 1.990 |
Rmerge | 0.095 | 0.024 | 0.842 |
Rmeas | 0.110 | 0.028 | 0.978 |
Total number of observations | 184069 | ||
Number of reflections | 47141 | 529 | 3481 |
<I/σ(I)> | 13.65 | 48.12 | 2 |
Completeness [%] | 97.8 | 98.1 | 96.6 |
Redundancy | 3.905 | 3.509 | 3.93 |
CC(1/2) | 0.998 | 0.998 | 0.532 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 8.3 | 298 | PEG3350, Ammonium Acetate, Magnesium Chloride, Methanol |