6LGC

Bombyx mori GH13 sucrose hydrolase complexed with 1-deoxynojirimycin

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	PHOTON FACTORY BEAMLINE AR-NW12A
Synchrotron site	Photon Factory
Beamline	AR-NW12A
Temperature [K]	100
Detector technology	PIXEL
Collection date	2019-06-23
Detector	DECTRIS PILATUS3 S 2M
Wavelength(s)	1.0
Spacegroup name	P 21 21 21
Unit cell lengths	65.634, 146.750, 154.025
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	48.970 - 1.900
R-factor	0.1739
Rwork	0.173
R-free	0.19660
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	5brq
RMSD bond length	0.010
RMSD bond angle	1.516
Data reduction software	MOSFLM
Data scaling software	SCALA
Phasing software	MOLREP
Refinement software	REFMAC (5.8.0258)

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	50.000	2.000
High resolution limit [Å]	1.900	1.900
Rmerge	0.099	0.933
Number of reflections	117900	17039
<I/σ(I)>	18.4	3
Completeness [%]	100.0	100
Redundancy	13.1	12.8
CC(1/2)	0.999	0.850

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, HANGING DROP		293	8% PEG 3350, 0.2 M magnesium acetate, 2 mM 1-deoxynojirimycin