Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6LDO

Crystal structure of cystathionine gamma-lyase from Lactobacillus plantarum complexed with L-serine

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSPRING-8 BEAMLINE BL38B1
Synchrotron siteSPring-8
BeamlineBL38B1
Temperature [K]100
Detector technologyCCD
Collection date2014-06-25
DetectorADSC QUANTUM 315
Wavelength(s)1.0
Spacegroup nameC 1 2 1
Unit cell lengths217.412, 201.149, 113.938
Unit cell angles90.00, 117.39, 90.00
Refinement procedure
Resolution35.682 - 2.750
R-factor0.1632
Rwork0.161
R-free0.20180
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)pdbid 4L0O
Data reduction softwareHKL-2000 (v1.0)
Data scaling softwareSCALEPACK (v1.0)
Phasing softwareMOLREP
Refinement softwarePHENIX (1.14_3260)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]100.000100.0002.850
High resolution limit [Å]2.7435.9202.750
Rmerge0.1090.0470.436
Rmeas0.1270.0550.508
Rpim0.0650.0280.260
Number of reflections1127361135211268
<I/σ(I)>6.7
Completeness [%]99.999.4100
Redundancy3.83.73.8
CC(1/2)0.9970.864
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4298KH2PO4, NaH2PO4

246031

PDB entries from 2025-12-10

PDB statisticsPDBj update infoContact PDBjnumon