6LAD
Crystal structure of Amuc_1100 from Akkermansia muciniphila
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-21 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 116.657, 123.560, 131.072 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.933 - 2.700 |
R-factor | 0.215 |
Rwork | 0.213 |
R-free | 0.24900 |
Structure solution method | SAD |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | SOLVE |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.800 |
High resolution limit [Å] | 2.700 | 5.810 | 2.700 |
Rmerge | 0.063 | 0.032 | 0.856 |
Rmeas | 0.067 | 0.034 | 0.901 |
Rpim | 0.021 | 0.011 | 0.278 |
Total number of observations | 523303 | ||
Number of reflections | 51987 | 5446 | 5157 |
<I/σ(I)> | 11.7 | ||
Completeness [%] | 98.6 | 98.1 | 99.6 |
Redundancy | 10.1 | 9.7 | 10.2 |
CC(1/2) | 0.999 | 0.862 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 289 | 0.1 M Tris-HCl, pH 8.0, 40% PEG 1000 |