6L6J
Structure of 6-hydroxypseudooxynicotine (6-HPON) amine oxidase (HisD) from Pseudomonas geniculata N1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-01-18 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9789 |
Spacegroup name | C 2 2 2 |
Unit cell lengths | 115.110, 212.902, 79.470 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.970 - 2.600 |
R-factor | 0.172 |
Rwork | 0.170 |
R-free | 0.20570 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3k30 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.501 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0257) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.690 |
High resolution limit [Å] | 2.600 | 5.600 | 2.600 |
Rmerge | 0.164 | 0.070 | 0.601 |
Rmeas | 0.174 | 0.074 | 0.638 |
Rpim | 0.055 | 0.024 | 0.208 |
Total number of observations | 276129 | ||
Number of reflections | 29678 | 3171 | 2748 |
<I/σ(I)> | 4.8 | ||
Completeness [%] | 98.8 | 99.8 | 92.7 |
Redundancy | 9.3 | 9.5 | 8.2 |
CC(1/2) | 0.997 | 0.922 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.5 M Ammonium sulfate 0.1 M Sodium citrate dihydrate pH 5.6 1.0 M Lithium sulfate monohydrate |