6L5B
The structure of the UdgX mutant H109E at a post-excision state
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-04-14 |
Detector | OXFORD ONYX CCD |
Wavelength(s) | 1.54 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 38.736, 50.923, 40.285 |
Unit cell angles | 90.00, 91.31, 90.00 |
Refinement procedure
Resolution | 21.275 - 2.000 |
R-factor | 0.173349796812 |
Rwork | 0.171 |
R-free | 0.21233 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6io9 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.073 |
Data reduction software | CrysalisPro |
Data scaling software | CrysalisPro |
Phasing software | PHASER |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 21.275 | 2.110 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.065 | 0.233 |
Number of reflections | 10298 | 1484 |
<I/σ(I)> | 10.1 | 3.4 |
Completeness [%] | 96.8 | 95.2 |
Redundancy | 2.5 | 1.8 |
CC(1/2) | 0.998 | 0.919 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 298 | 2.15M sodium malonate pH 7.0 and 3.8% MPD |