6KSN
Structure of a Zn-bound camelid single domain antibody
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2018-03-07 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 106.880, 106.880, 70.580 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 46.280 - 2.150 |
R-factor | 0.1952 |
Rwork | 0.193 |
R-free | 0.23240 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3jbe |
RMSD bond length | 0.006 |
RMSD bond angle | 0.914 |
Data reduction software | iMOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.220 |
High resolution limit [Å] | 2.150 | 2.150 |
Rmerge | 0.012 | 1.146 |
Rmeas | 0.138 | 1.223 |
Rpim | 0.045 | 0.422 |
Number of reflections | 25502 | 2171 |
<I/σ(I)> | 11.1 | 1.9 |
Completeness [%] | 99.6 | 98.7 |
Redundancy | 8.9 | 8 |
CC(1/2) | 0.997 | 0.624 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.25 | 277 | 0.1M Tris, pH8.25, 3.5M Na Formate |