6KRW
Crystal Structure of AtPTP1 at 1.4 angstrom
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-07-15 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.978 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 117.682, 42.213, 72.959 |
Unit cell angles | 90.00, 109.49, 90.00 |
Refinement procedure
Resolution | 37.500 - 1.400 |
R-factor | 0.13474 |
Rwork | 0.133 |
R-free | 0.16611 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2hnp |
RMSD bond length | 0.011 |
RMSD bond angle | 1.491 |
Data reduction software | HKL-2000 (v716) |
Data scaling software | HKL-2000 (v716) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0253) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.450 |
High resolution limit [Å] | 1.400 | 1.400 |
Rmerge | 0.037 | 0.630 |
Rmeas | 0.040 | |
Rpim | 0.015 | |
Number of reflections | 65204 | 6439 |
<I/σ(I)> | 45.3 | 2.8 |
Completeness [%] | 97.4 | 96.6 |
Redundancy | 6.7 | 6.6 |
CC(1/2) | 0.998 | 0.848 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 293 | 0.1 M sodium citrate (pH 6.0), 25 ~ 30% polyethylene glycol (PEG) 3350, 0.2 M potassium iodide. |