6KQ1
Crystal structure of cytochrome c551 from Pseudomonas sp. strain MT-1.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL26B1 |
Synchrotron site | SPring-8 |
Beamline | BL26B1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-07-17 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 50.787, 52.017, 62.393 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.978 - 1.570 |
R-factor | 0.2031 |
Rwork | 0.201 |
R-free | 0.22400 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 351c |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX |
Refinement software | PHENIX (1.16-3549-000) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 39.950 | 39.950 | 1.600 |
High resolution limit [Å] | 1.570 | 8.600 | 1.570 |
Rmerge | 0.095 | 0.040 | 1.188 |
Total number of observations | 309252 | 1428 | 13155 |
Number of reflections | 23763 | 183 | 1168 |
<I/σ(I)> | 15 | 37.3 | 2.1 |
Completeness [%] | 100.0 | 99.4 | 99.9 |
Redundancy | 13 | 7.8 | 11.3 |
CC(1/2) | 0.999 | 0.999 | 0.918 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 10% (w/v) PEG 8000, 100 mM MES/ Sodium hydroxide pH 6.0, 200 mM Zinc acetate |