6K3G
Crystal structure of 10-Hydroxygeraniol Dehydrogenase from Cantharanthus roseus in complex with NADP+
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ELETTRA BEAMLINE 5.2R |
Synchrotron site | ELETTRA |
Beamline | 5.2R |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-12 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.0393 |
Spacegroup name | P 32 1 2 |
Unit cell lengths | 53.180, 53.180, 252.773 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 42.160 - 2.410 |
R-factor | 0.21017 |
Rwork | 0.207 |
R-free | 0.26611 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1yqd |
RMSD bond length | 0.014 |
RMSD bond angle | 2.000 |
Data reduction software | MOSFLM (7.2.1) |
Data scaling software | Aimless (0.5.21) |
Phasing software | PHASER (2.6.1) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.060 | 2.500 |
High resolution limit [Å] | 2.410 | 2.410 |
Rmerge | 0.124 | 0.849 |
Rmeas | 0.146 | 0.990 |
Rpim | 0.075 | 0.500 |
Number of reflections | 16295 | 1645 |
<I/σ(I)> | 10.9 | 2.7 |
Completeness [%] | 99.9 | 99.4 |
Redundancy | 6.8 | 7 |
CC(1/2) | 0.996 | 0.919 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 294 | MES, PEG 6000, 2-Methyl-2,4-pentanediol, Sodium chloride |