6K2N
Structural basis of glycan recognition in globally predominant human P[8] rotavirus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 113 |
Detector technology | CCD |
Collection date | 2017-12-16 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97774 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 66.289, 114.550, 73.789 |
Unit cell angles | 90.00, 95.96, 90.00 |
Refinement procedure
Resolution | 46.695 - 1.800 |
R-factor | 0.2037 |
Rwork | 0.202 |
R-free | 0.22880 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5jdb |
RMSD bond length | 0.005 |
RMSD bond angle | 0.689 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.860 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.084 | 0.804 |
Number of reflections | 99560 | 99560 |
<I/σ(I)> | 21.597 | 1.5 |
Completeness [%] | 98.4 | |
Redundancy | 6.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 0.1 M Sodium acetate trihydrate pH 4.5, 2.0 M ammonium sulfate |