6JQT
Crystal structure of ordered Asn70 and Asn116 in native peptidyl t-RNA hydrolase from Acinetobacter baumannii at 1.80 Angstrom resolution.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-1 |
Synchrotron site | ESRF |
Beamline | MASSIF-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-08 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.966 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 33.918, 66.290, 75.968 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.950 - 1.800 |
R-factor | 0.20747 |
Rwork | 0.205 |
R-free | 0.24830 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6j93 |
RMSD bond length | 0.011 |
RMSD bond angle | 1.697 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.950 | 1.880 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmeas | 0.143 | 0.383 |
Number of reflections | 16506 | 3101 |
<I/σ(I)> | 12.57 | 3.23 |
Completeness [%] | 87.2 | 81.7 |
Redundancy | 2.3 | 2.1 |
CC(1/2) | 0.900 | 0.880 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 298 | 12% PEG 1500, 0.1M HEPES, pH 7.5, 20% Glycerol |