6JMZ
Structure of H247A mutant open form peptidoglycan peptidase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 7A (6B, 6C1) |
Synchrotron site | PAL/PLS |
Beamline | 7A (6B, 6C1) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-12-23 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 1.0 |
Spacegroup name | P 61 |
Unit cell lengths | 114.251, 114.251, 55.550 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 39.825 - 1.920 |
R-factor | 0.1723 |
Rwork | 0.171 |
R-free | 0.19680 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.950 |
High resolution limit [Å] | 1.920 | 5.210 | 1.920 |
Rmerge | 0.119 | 0.075 | 0.849 |
Number of reflections | 60451 | 2907 | 2985 |
<I/σ(I)> | 13.9 | ||
Completeness [%] | 98.5 | 94.3 | 98.2 |
Redundancy | 10.8 | 10.3 | 10.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 296 | 100mM sodium citrate tribasic dihydrate at pH 4.5, 200mM potassium sodium tartrate tetrahydrate, 2.0M ammonium sulfate |