6JMX
Structure of open form of peptidoglycan peptidase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 5C (4A) |
Synchrotron site | PAL/PLS |
Beamline | 5C (4A) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-06-12 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.0 |
Spacegroup name | P 61 |
Unit cell lengths | 114.519, 114.519, 57.908 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 28.710 - 1.859 |
R-factor | 0.1737 |
Rwork | 0.172 |
R-free | 0.19880 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.780 |
High resolution limit [Å] | 1.750 | 4.750 | 1.750 |
Rmerge | 0.069 | 0.043 | 0.722 |
Rmeas | 0.074 | 0.047 | 0.778 |
Rpim | 0.027 | 0.017 | 0.288 |
Number of reflections | 85298 | 4269 | 4259 |
<I/σ(I)> | 7.2 | ||
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 7.1 | 7.4 | 7.2 |
CC(1/2) | 0.998 | 0.851 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 296 | 200mM potassium sodium tartrate, 100mM tri-sodium citrate at pH 5.6, 2M ammonium sulfate |