6JL2
Crystal structure of VvPlpA G389N from Vibrio vulnificus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-18 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9791 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 167.946, 64.551, 160.649 |
Unit cell angles | 90.00, 116.55, 90.00 |
Refinement procedure
Resolution | 46.000 - 2.300 |
R-factor | 0.175 |
Rwork | 0.174 |
R-free | 0.20700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6jkz |
RMSD bond length | 0.010 |
RMSD bond angle | 0.990 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.2) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 83.680 | 2.337 |
High resolution limit [Å] | 2.298 | 2.298 |
Rmeas | 0.059 | 0.229 |
Rpim | 0.023 | 0.095 |
Number of reflections | 63445 | 2593 |
<I/σ(I)> | 21.8 | 5.9 |
Completeness [%] | 91.9 | 76.2 |
Redundancy | 6.6 | |
CC(1/2) | 0.998 | 0.998 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 4 mg/ml in 10 mM HEPES, 150 mM NaCl, pH 7.5 was mixed with the reservoir solution (200 mM potassium sodium tartrate tetrahydrate, 180 mM NDSB-201, 14% polyethylene glycol 1500, and 5% glycerol) |