6JK5
Ca2+-dependent type II antifreeze protein (Ca2+-free form)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NW12A |
Synchrotron site | Photon Factory |
Beamline | AR-NW12A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2005-05-29 |
Detector | ADSC QUANTUM 210 |
Wavelength(s) | 1.0 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 66.029, 66.029, 50.295 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 16.390 - 1.250 |
R-factor | 0.18127 |
Rwork | 0.180 |
R-free | 0.21181 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2zib |
RMSD bond length | 0.016 |
RMSD bond angle | 1.853 |
Data reduction software | HKL-2000 (1.97.8) |
Data scaling software | HKL-2000 (1.97.8) |
Phasing software | MOLREP (7.3.03) |
Refinement software | REFMAC (5.8.0230) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 16.400 | 1.320 |
High resolution limit [Å] | 1.250 | 1.250 |
Rmerge | 0.052 | 0.234 |
Rmeas | 0.055 | 0.246 |
Number of reflections | 34554 | 5130 |
<I/σ(I)> | 8.5 | 3.2 |
Completeness [%] | 98.3 | 98.3 |
Redundancy | 10.1 | 10.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4 | 293 | 0.1M sodium acetate, 0.25M ammonium sulfate, 8% PEG 3350 The crystal was soaked in crystallizaion solution pH adjusted to 3.0 before data collection. |