6JK0
Crystal Structure of YAP1 and Dendrin complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-03-04 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.979 |
Spacegroup name | P 63 2 2 |
Unit cell lengths | 94.606, 94.606, 174.397 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 32.059 - 3.100 |
R-factor | 0.216 |
Rwork | 0.213 |
R-free | 0.24280 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4rex |
RMSD bond length | 0.018 |
RMSD bond angle | 1.265 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.150 |
High resolution limit [Å] | 3.100 | 3.100 |
Rmerge | 0.225 | 1.000 |
Number of reflections | 8993 | 444 |
<I/σ(I)> | 15.3 | 2 |
Completeness [%] | 99.9 | 100 |
Redundancy | 34.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 289 | 25-30% w/v PEG400, 200mM CaCl2, 100mM HEPS (pH 7.5) |