6JJQ
Crystal structure of peptidyl-tRNA hydrolase from Acinetobacter baumannii at 0.99 A resolution.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-01 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 0.97201 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 34.139, 65.976, 76.011 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.830 - 0.990 |
R-factor | 0.12993 |
Rwork | 0.130 |
R-free | 0.13932 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5y9a |
RMSD bond length | 0.021 |
RMSD bond angle | 2.096 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.830 | 1.010 |
High resolution limit [Å] | 0.990 | 0.990 |
Rmerge | 0.059 | 2.300 |
Rmeas | 0.063 | 2.890 |
Rpim | 0.025 | 1.710 |
Number of reflections | 86816 | 5381 |
<I/σ(I)> | 9.8 | 0.4 |
Completeness [%] | 92.0 | 29.3 |
Redundancy | 5.64 | |
CC(1/2) | 0.990 | 0.110 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 298 | HEPES, PEG 1500, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298 K |