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6JJI

Crystal structure of a two-quartet RNA parallel G-quadruplex complexed with the porphyrin TMPyP4 (1:1)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL19U1
Synchrotron siteSSRF
BeamlineBL19U1
Temperature [K]100
Detector technologyPIXEL
Collection date2018-05-05
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.97900
Spacegroup nameP 2 2 21
Unit cell lengths23.509, 29.244, 57.557
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution16.042 - 3.100
R-factor0.195
Rwork0.193
R-free0.24970
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6jjh
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwarePHASER
Refinement softwarePHENIX (1.13_2998)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]16.0423.210
High resolution limit [Å]3.1003.100
Rmerge0.1080.403
Number of reflections82579
<I/σ(I)>8.6
Completeness [%]96.6
Redundancy9.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6283Potassium cacodylate, Sodium cacodylate, Potassium chloride, MPD

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PDB entries from 2024-05-15

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