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6JFC

Actinonin bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPAL/PLS BEAMLINE 5C (4A)
Synchrotron sitePAL/PLS
Beamline5C (4A)
Temperature [K]100
Detector technologyCCD
Collection date2017-05-18
DetectorADSC QUANTUM 315r
Wavelength(s)0.97950
Spacegroup nameC 2 2 21
Unit cell lengths44.020, 122.634, 148.142
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution49.990 - 2.040
R-factor0.2053
Rwork0.203
R-free0.25050
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6jf9
RMSD bond length0.019
RMSD bond angle2.011
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0238)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.080
High resolution limit [Å]2.0405.5402.040
Rmerge0.1620.1180.481
Rmeas0.1860.1360.555
Rpim0.0890.0670.269
Number of reflections2528112901195
<I/σ(I)>15.4
Completeness [%]97.190.994.5
Redundancy4.84.74.2
CC(1/2)0.9500.789
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1EVAPORATION82870.03 M CaCl2, 0.03 M MgCl2, 0.1 M Sodium Hepes, MOPS pH 8.0, 10.0% (v/v) MPD, 10.0% (w/v) P1k, 10.0% (w/v) PEG 3,350

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PDB entries from 2024-05-15

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