6JEA
crystal structure of a beta-N-acetylhexosaminidase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-27 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9793 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 68.555, 83.309, 91.350 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.011 - 2.275 |
R-factor | 0.1703 |
Rwork | 0.168 |
R-free | 0.21480 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3rcn |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MoRDa |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.380 |
High resolution limit [Å] | 2.300 | 4.950 | 2.300 |
Rmerge | 0.171 | 0.073 | 0.951 |
Rmeas | 0.190 | 0.081 | 1.057 |
Rpim | 0.081 | 0.034 | 0.451 |
Total number of observations | 130566 | ||
Number of reflections | 24175 | 2568 | 2379 |
<I/σ(I)> | 4 | ||
Completeness [%] | 99.4 | 98.7 | 100 |
Redundancy | 5.4 | 5.2 | 5.4 |
CC(1/2) | 0.994 | 0.550 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289 | 1.1M Sodium malonate, pH 7.0; 0.1 M HEPES pH 7.0; 0.5%v/v Jeffamine ED-2001 pH 7.0 and 0.2 M sodium formate; 20% PEG3350. |