6JE8
crystal structure of a beta-N-acetylhexosaminidase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-10-19 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 69.422, 84.345, 92.447 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.224 - 1.798 |
R-factor | 0.145 |
Rwork | 0.143 |
R-free | 0.17690 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3rcn |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MoRDa |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.860 |
High resolution limit [Å] | 1.800 | 3.880 | 1.800 |
Rmerge | 0.103 | 0.056 | 0.508 |
Rmeas | 0.113 | 0.061 | 0.567 |
Rpim | 0.045 | 0.025 | 0.246 |
Total number of observations | 303267 | ||
Number of reflections | 50339 | 5322 | 4705 |
<I/σ(I)> | 11.7 | ||
Completeness [%] | 98.6 | 98.8 | 93.4 |
Redundancy | 6 | 5.9 | 4.8 |
CC(1/2) | 0.996 | 0.851 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289 | 1.1M Sodium malonate, pH 7.0; 0.1 M HEPES pH 7.0; 0.5%v/v Jeffamine ED-2001 pH 7.0 and 0.2 M sodium formate; 20% PEG3350 |