6JDC
Crystal structure of N-acetyl mannosmaine kinase in complex with ManNAc from Haemophilus influenzae
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-03-10 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.865 |
Spacegroup name | I 41 2 2 |
Unit cell lengths | 91.102, 91.102, 184.033 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.008 - 2.271 |
R-factor | 0.2191 |
Rwork | 0.217 |
R-free | 0.26630 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6jdb |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.2) |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3211: ???) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.010 | 46.010 | 2.290 |
High resolution limit [Å] | 2.220 | 8.870 | 2.220 |
Rmerge | 0.072 | 0.021 | 0.430 |
Rmeas | 0.084 | 0.024 | 0.518 |
Rpim | 0.042 | 0.012 | 0.283 |
Total number of observations | 69837 | ||
Number of reflections | 19197 | 344 | 1661 |
<I/σ(I)> | 11.3 | ||
Completeness [%] | 98.1 | 93.1 | 93.8 |
Redundancy | 3.6 | 3.4 | 2.9 |
CC(1/2) | 0.999 | 0.999 | 0.304 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 0.2M sodium malonate 7.0, 20% w/v PEG 3350. |