6J8N
Crystal structure of SVBP-VASH1 complex, mutation C169A of VASH1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-09-22 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 70.020, 90.078, 124.498 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.703 - 1.950 |
R-factor | 0.1861 |
Rwork | 0.185 |
R-free | 0.21020 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | a low resolution SeMet structure in our group |
RMSD bond length | 0.005 |
RMSD bond angle | 0.868 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX ((1.14_3260: 000)) |
Refinement software | PHENIX ((1.14_3260: 000)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.020 |
High resolution limit [Å] | 1.950 | 1.950 |
Rpim | 0.048 | 0.292 |
Number of reflections | 58570 | 5755 |
<I/σ(I)> | 18 | |
Completeness [%] | 100.0 | 99.9 |
Redundancy | 12.8 | 12.6 |
CC(1/2) | 1.000 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 6% v/v Tacsimate pH6.0, 0.1M MES monohydrate pH 6.0, 25% PEG 4000 |