6J4R
Structural basis for the target DNA recognition and binding by the MYB domain of phosphate starvation response regulator 1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-06-04 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.979 |
Spacegroup name | P 42 21 2 |
Unit cell lengths | 88.966, 88.966, 143.445 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 71.720 - 2.800 |
R-factor | 0.2171 |
Rwork | 0.215 |
R-free | 0.24910 |
RMSD bond length | 0.012 |
RMSD bond angle | 1.629 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHENIX |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 75.610 | 75.610 | 2.950 |
High resolution limit [Å] | 2.800 | 8.850 | 2.800 |
Rmerge | 0.111 | 2.800 | 4.072 |
Rmeas | 0.116 | 0.030 | 4.235 |
Rpim | 0.033 | 0.010 | 1.157 |
Number of reflections | 14723 | 562 | 2082 |
<I/σ(I)> | 16 | ||
Completeness [%] | 99.2 | 99.8 | 99.2 |
Redundancy | 12.6 | 9.7 | 13.2 |
CC(1/2) | 0.999 | 0.999 | 0.619 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 289 | 28%PEG3350 , 0.1M citrate-Na pH 5.5 |