6J4K
Structural basis for the target DNA recognition and binding by the MYB domain of phosphate starvation response 1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-04-06 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.979 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 41.344, 140.221, 65.584 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.940 - 1.580 |
R-factor | 0.1926 |
Rwork | 0.191 |
R-free | 0.21730 |
Structure solution method | SAD |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.940 | 47.900 | 1.610 |
High resolution limit [Å] | 1.580 | 8.650 | 1.580 |
Rmerge | 0.043 | 0.029 | 1.806 |
Rmeas | 0.045 | 0.031 | 2.015 |
Rpim | 0.013 | 0.009 | 0.871 |
Number of reflections | 26266 | 203 | 1116 |
<I/σ(I)> | 24.1 | ||
Completeness [%] | 98.7 | 99.5 | 88 |
Redundancy | 11.3 | 9.8 | 5 |
CC(1/2) | 1.000 | 0.999 | 0.395 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 289 | 2.4M sodium malonate pH 7.0 |