6IO6
Silver-bound Glyceraldehyde-3-phosphate dehydrogenase A at non-catalytic site
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-03-25 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9792 |
Spacegroup name | I 41 2 2 |
Unit cell lengths | 122.260, 122.260, 157.780 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.321 - 2.640 |
R-factor | 0.2042 |
Rwork | 0.202 |
R-free | 0.24280 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1gad |
Data reduction software | xia2 |
Data scaling software | Aimless (0.6.2) |
Phasing software | PHASER (2.7.2) |
Refinement software | PHENIX ((1.14_3260:000)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.320 | 48.320 | 2.710 |
High resolution limit [Å] | 2.640 | 11.810 | 2.640 |
Rmerge | 0.251 | 0.141 | 3.354 |
Rmeas | 0.256 | 0.144 | 3.432 |
Rpim | 0.051 | 0.031 | 0.689 |
Total number of observations | 480506 | 5174 | 35628 |
Number of reflections | 17924 | 243 | 1315 |
<I/σ(I)> | 8.8 | 14.8 | 2 |
Completeness [%] | 99.9 | 98.3 | 99.4 |
Redundancy | 26.8 | 21.3 | 27.1 |
CC(1/2) | 0.973 | 0.978 | 0.700 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 298 | 0.1M Malic acid, PEG3350 20% |