6IGQ
Crystal structure of inactive state of S9 peptidase from Deinococcus radiodurans R1 (PMSF treated)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | RRCAT INDUS-2 BEAMLINE PX-BL21 |
Synchrotron site | RRCAT INDUS-2 |
Beamline | PX-BL21 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-10-30 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.97947 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 119.658, 129.989, 194.130 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.872 - 2.300 |
R-factor | 0.1935 |
Rwork | 0.192 |
R-free | 0.22410 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5yzm |
RMSD bond length | 0.006 |
RMSD bond angle | 0.810 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11.1_2575: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.890 | 2.340 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmerge | 0.157 | 0.997 |
Rmeas | 0.169 | 1.072 |
Rpim | 0.062 | 0.391 |
Number of reflections | 134697 | 6616 |
<I/σ(I)> | 12 | 2.2 |
Completeness [%] | 100.0 | 100 |
Redundancy | 7.4 | 7.4 |
CC(1/2) | 0.997 | 0.781 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 5.31 | 294 | 0.17M ammonium sulphate, 25.5% PEG 4000, 15% glycerol |