6IFC
Crystal structure of VapBC from Salmonella typhimurium
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 5C (4A) |
Synchrotron site | PAL/PLS |
Beamline | 5C (4A) |
Temperature [K] | 293 |
Detector technology | CCD |
Collection date | 2016-12-01 |
Detector | Nonius Kappa CCD |
Wavelength(s) | 0.97960 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 53.956, 114.942, 53.998 |
Unit cell angles | 90.00, 114.12, 90.00 |
Refinement procedure
Resolution | 57.470 - 1.990 |
R-factor | 0.17832 |
Rwork | 0.175 |
R-free | 0.23833 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3tnd |
RMSD bond length | 0.016 |
RMSD bond angle | 1.590 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0049) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 57.470 | 2.030 |
High resolution limit [Å] | 1.990 | 2.000 |
Rmerge | 0.090 | |
Rpim | 0.140 | |
Number of reflections | 38222 | |
<I/σ(I)> | 25.61 | |
Completeness [%] | 93.8 | |
Redundancy | 4.5 | |
CC(1/2) | 0.942 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2 M lithium sulfate, 0.1 M CAPS/ Sodium hydroxide pH 10.5, 2M Ammonium Sulfate |