6IDR
Crystal structure of Vibrio cholerae MATE transporter VcmN in the bent form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL32XU |
Synchrotron site | SPring-8 |
Beamline | BL32XU |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-04-15 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 1.0000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 52.254, 93.742, 100.243 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.121 - 2.502 |
R-factor | 0.2365 |
Rwork | 0.233 |
R-free | 0.26450 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.780 |
Data reduction software | DIALS |
Data scaling software | Aimless (0.5.23) |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 93.740 | 93.740 | 2.600 |
High resolution limit [Å] | 2.500 | 9.000 | 2.500 |
Rmerge | 0.232 | 0.046 | 0.906 |
Rmeas | 0.252 | 0.050 | 0.995 |
Rpim | 0.096 | 0.020 | 0.406 |
Total number of observations | 118705 | ||
Number of reflections | 17737 | 452 | 1919 |
<I/σ(I)> | 5.9 | ||
Completeness [%] | 99.8 | 99.9 | 98.5 |
Redundancy | 6.7 | 6 | 5.9 |
CC(1/2) | 0.989 | 0.997 | 0.635 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIPIDIC CUBIC PHASE | 293 | PEG 300, sodium citrate, ammonium fluoride |