6I8W
Crystal structure of a membrane phospholipase A, a novel bacterial virulence factor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-02-08 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9686 |
Spacegroup name | I 41 2 2 |
Unit cell lengths | 133.871, 133.871, 212.358 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.330 - 2.000 |
R-factor | 0.1642 |
Rwork | 0.163 |
R-free | 0.18570 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2vf2 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.069 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MrBUMP |
Refinement software | PHENIX (1.8.2_1309) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.330 | 2.050 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.053 | |
Rmeas | 0.056 | |
Rpim | 0.017 | 0.307 |
Number of reflections | 65113 | 4527 |
<I/σ(I)> | 24.6 | 2.5 |
Completeness [%] | 100.0 | 100 |
Redundancy | 10.3 | 10.5 |
CC(1/2) | 1.000 | 0.789 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.6 | 292.15 | 0.1 M Trisodium citrate, 10% (w/v) PEG 4000, 10% (w/v) Isopropanol |