6I3Q
The structure of thiocyanate dehydrogenase from Thioalkalivibrio paradoxus complex with acetate ions.
Replaces: 5F30Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-11-20 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97242 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 90.960, 162.700, 90.938 |
Unit cell angles | 90.00, 119.93, 90.00 |
Refinement procedure
Resolution | 45.480 - 1.450 |
R-factor | 0.143 |
Rwork | 0.142 |
R-free | 0.16500 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | IN-HOUSE SAD STRUCTURE |
RMSD bond length | 0.013 |
RMSD bond angle | 1.717 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.000 | 1.500 |
High resolution limit [Å] | 1.450 | 1.450 |
Rmerge | 0.080 | 0.630 |
Number of reflections | 392121 | |
<I/σ(I)> | 9.2 | 2 |
Completeness [%] | 97.0 | 98 |
Redundancy | 2.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.6 | 293 | PROTEIN SOLUTION: 10 MG/ML PROT., 25 0.17 M AMMONIUM ACETATE, 0.085 M TRI-SODIUM CITRATE (PH 5.6), 25.5 % W/V PEG 4000, 15 % GLYCEROL. V1/V2=1/1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K |