Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6I3Q

The structure of thiocyanate dehydrogenase from Thioalkalivibrio paradoxus complex with acetate ions.

Replaces:  5F30
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID23-1
Synchrotron siteESRF
BeamlineID23-1
Temperature [K]100
Detector technologyCCD
Collection date2013-11-20
DetectorADSC QUANTUM 315r
Wavelength(s)0.97242
Spacegroup nameP 1 21 1
Unit cell lengths90.960, 162.700, 90.938
Unit cell angles90.00, 119.93, 90.00
Refinement procedure
Resolution45.480 - 1.450
R-factor0.143
Rwork0.142
R-free0.16500
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)IN-HOUSE SAD STRUCTURE
RMSD bond length0.013
RMSD bond angle1.717
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0073)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]46.0001.500
High resolution limit [Å]1.4501.450
Rmerge0.0800.630
Number of reflections392121
<I/σ(I)>9.22
Completeness [%]97.098
Redundancy2.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.6293PROTEIN SOLUTION: 10 MG/ML PROT., 25 0.17 M AMMONIUM ACETATE, 0.085 M TRI-SODIUM CITRATE (PH 5.6), 25.5 % W/V PEG 4000, 15 % GLYCEROL. V1/V2=1/1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon