6HYL
Structure of PCM1 LIR motif bound to GABARAP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-12-18 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 53.696, 65.977, 95.722 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 54.320 - 1.559 |
R-factor | 0.2013 |
Rwork | 0.199 |
R-free | 0.24690 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1gnu |
RMSD bond length | 0.002 |
RMSD bond angle | 0.514 |
Data reduction software | DIALS |
Data scaling software | DIALS |
Phasing software | PHASER |
Refinement software | PHENIX ((1.12_2829: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 54.320 | 1.610 |
High resolution limit [Å] | 1.550 | 1.550 |
Rmerge | 0.050 | 0.970 |
Rmeas | 0.060 | 1.080 |
Rpim | 0.020 | 0.470 |
Number of reflections | 49150 | 4840 |
<I/σ(I)> | 11.1 | 1.2 |
Completeness [%] | 99.0 | 95.7 |
Redundancy | 5.2 | 5.1 |
CC(1/2) | 0.998 | 0.690 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2 M CaCl2, 0.1 M HEPES pH 7, 20% w/v PEG 6000 |