6HTN
Structure of a fucose lectin from Kordia zhangzhouensis in complex with methyl-fucoside
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SOLEIL BEAMLINE PROXIMA 1 |
| Synchrotron site | SOLEIL |
| Beamline | PROXIMA 1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2018-04-10 |
| Detector | DECTRIS PILATUS3 S 6M |
| Wavelength(s) | 0.97857 |
| Spacegroup name | P 2 21 21 |
| Unit cell lengths | 87.102, 90.522, 143.777 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 39.250 - 1.550 |
| R-factor | 0.15659 |
| Rwork | 0.155 |
| R-free | 0.18002 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | SAD model |
| RMSD bond length | 0.016 |
| RMSD bond angle | 1.802 |
| Data reduction software | XDS (20180126) |
| Data scaling software | Aimless (0.7.2) |
| Phasing software | SHELXD (2016.1) |
| Refinement software | REFMAC (5.8.0232) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 39.250 | 1.570 |
| High resolution limit [Å] | 1.550 | 1.550 |
| Rmerge | 0.041 | 0.654 |
| Rmeas | 0.051 | 0.824 |
| Rpim | 0.031 | 0.496 |
| Number of reflections | 165158 | 7950 |
| <I/σ(I)> | 16.9 | |
| Completeness [%] | 99.8 | 98 |
| Redundancy | 5 | 5 |
| CC(1/2) | 0.999 | 0.773 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 292 | Morpheus 1 box 1 solution 40 for Mefuc complex or 35% PEG smear medium 10% isopropanol for complex with selenofucoside |
