6HM8
Crystal structure of human ACBD3 GOLD domain in complex with 3A protein of enterovirus-D68 (fusion protein)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-04-06 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9184 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 96.361, 55.659, 64.372 |
Unit cell angles | 90.00, 111.89, 90.00 |
Refinement procedure
Resolution | 41.220 - 2.277 |
R-factor | 0.2186 |
Rwork | 0.218 |
R-free | 0.23320 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5lz1 |
RMSD bond length | 0.006 |
RMSD bond angle | 0.954 |
Data reduction software | XDS (11-Sep-2018) |
Data scaling software | XDS (11-Sep-2018) |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 41.220 | 2.359 |
High resolution limit [Å] | 2.277 | 2.277 |
Rmerge | 0.051 | 0.487 |
Rmeas | 0.059 | |
Number of reflections | 14316 | 1310 |
<I/σ(I)> | 13.99 | 2.24 |
Completeness [%] | 97.8 | 90.41 |
Redundancy | 3.8 | 3.6 |
CC(1/2) | 0.998 | 0.881 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 10% w/v PEG 8000, 6% v/v 1,5-pentanediol, 14% v/v PEG 200, 10 mM spermine, 10 mM spermidine, 10 mM DL-ornithine, 10 mM 1,4-diaminobutane, 200 mM NaCl, 100 mM GlyGly/AMPD pH 8.5 |