6HJC
Crystal structure of Loei River virus GP1 glycoprotein at pH 8.0
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-04-28 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97625 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 60.540, 60.540, 96.420 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.125 - 2.510 |
R-factor | 0.2089 |
Rwork | 0.207 |
R-free | 0.23820 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4zjf |
RMSD bond length | 0.002 |
RMSD bond angle | 0.420 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.12_2829: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.125 | 2.550 |
High resolution limit [Å] | 2.510 | 2.510 |
Rmerge | 0.112 | |
Number of reflections | 6515 | |
<I/σ(I)> | 15.4 | |
Completeness [%] | 99.2 | |
Redundancy | 11.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 298 | 5.3 mg/ml protein, 10% w/v ethanol, and 1.5 M NaCl |