6HGX
Soluble epoxide hydrolase in complex with 1-(4-((4-(tert-butyl)morpholin-2-yl)methoxy)phenyl)-3-cyclohexylurea
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-09-16 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.072 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 79.800, 92.000, 105.700 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 52.850 - 2.160 |
R-factor | 0.2073 |
Rwork | 0.202 |
R-free | 0.25360 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6fr2 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.006 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 52.850 | 52.850 | 2.210 |
High resolution limit [Å] | 2.150 | 9.630 | 2.150 |
Rmerge | 0.131 | 0.042 | 1.016 |
Rmeas | 0.143 | 0.047 | 1.104 |
Number of reflections | 21319 | 282 | 1436 |
<I/σ(I)> | 10.28 | 34.3 | 1.39 |
Completeness [%] | 99.3 | 98.9 | 91 |
Redundancy | 6.362 | 5.95 | 6.407 |
CC(1/2) | 0.996 | 0.997 | 0.724 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 1 uL protein solution Protein (5-10 mg/mL , 50 mM NaCl, 50 mM sodium phosphate, 10% glycerol (98%), 2 mM DTT at pH 7.4) was mixed in different ratios (2/1, 1/1, 1/2) with precipitant solution (23 %-28 % (w/v) polyethylenglycol (PEG) 6000, 70 mM ammonium acetat, 200 mM magnesium acetat, 100 mM sodium cacodylate at pH 6.1-6.5) |